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The Lettuce SPP Chip Project > Public > Data > Experiment Info >Download Raw and Processed CEL files of diversity panel



Raw and Processed CEL files of diversity panel can be down loaded from this page


Description of Raw CEL files of diversity panel
The DNA of each genotype was hybridized in three replications with lettuce chip and CEL file were generated. To save the download time we zipped the three CEL files of each genotype into one file. Download each zip file and unzip in MS windows or Unix to have access to these three files. According to QC analysis we found that some chips had low quality after hybridization, therefore they were re-hybridized. As a result, for those genotypes there are 4 CEL files. The re hybridized chips were normalized along with all other CEL files. Therefore, two normalization processes took place as described below.

Added on 26 Feb 2009

To donwload the raw CEL files of diversity panel, click on each link and save the zipped file of that particular genotype in your hard drive. Please note that attempting to open the files instead of saving them may halt your system.

LETG_BSP001_CEL (ZIP file, 69 MB) Cantabria L.sativa butterhead BSP001
LETG_BSP002_CEL (ZIP file, 69 MB) Marianna L.sativa butterhead BSP002
LETG_BSP003_CEL (ZIP file, 67 MB) Nadine L.sativa butterhead BSP003
LETG_BSP004_CEL (ZIP file, 69 MB) Rex L.sativa butterhead BSP004
LETG_BSP005_CEL (ZIP file, 73 MB) Fenston L.sativa butterhead BSP005
LETG_BSP006_CEL (ZIP file, 67 MB) Yael L.sativa cos BSP006
LETG_BSP007_CEL (ZIP file, 69 MB) Filipus L.sativa cos BSP007
LETG_BSP008_CEL (ZIP file, 65 MB) Odra L.sativa cos BSP008
LETG_BSP009_CEL (ZIP file, 69 MB) Pinokkio L.sativa cos BSP009
LETG_BSP010_CEL (ZIP file, 71 MB) Romaserra L.sativa cos BSP010
LETG_BSP011_CEL (ZIP file, 69 MB) Angie L.sativa crisphead batavia green BSP011
LETG_BSP012_CEL (ZIP file, 72 MB) Reglice L.sativa crisphead batavia green BSP012
LETG_BSP013_CEL (ZIP file, 70 MB) Funly L.sativa crisphead batavia green BSP013
LETG_BSP014_CEL (ZIP file, 69 MB) Noisette L.sativa crisphead batavia green BSP014
LETG_BSP015_CEL (ZIP file, 71 MB) Iceberg L.sativa crisphead batavia red BSP015
LETG_BSP016_CEL (ZIP file, 70 MB) Luana L.sativa crisphead batavia red BSP016
LETG_BSP017_CEL (ZIP file, 68 MB) Astral L.sativa crisphead iceberg BSP017
LETG_BSP018_CEL (ZIP file, 65 MB) Tiger L.sativa crisphead iceberg BSP018
LETG_BSP019_CEL (ZIP file, 68 MB) Robinson L.sativa crisphead iceberg BSP019
LETG_BSP020_CEL (ZIP file, 69 MB) Lilach L.sativa crisphead iceberg BSP020
LETG_BSP021_CEL (ZIP file, 71 MB) Berwick L.sativa curly BSP021
LETG_BSP022_CEL (ZIP file, 74 MB) Cancan L.sativa frisee BSP022
LETG_BSP023_CEL (ZIP file, 66 MB) Xanadu L.sativa grasse BSP023
LETG_BSP024_CEL (ZIP file, 70 MB) Aído L.sativa grasse red BSP024
LETG_BSP025_CEL (ZIP file, 70 MB) Xena L.sativa green leaf BSP025
LETG_BSP026_CEL (ZIP file, 74 MB) Deep Red L.sativa red leaf BSP026
LETG_BSP027_CEL (ZIP file, 71 MB) Locarno L.sativa lollo bionda BSP027
LETG_BSP028_CEL (ZIP file, 72 MB) Concorde L.sativa lollo rossa BSP028
LETG_BSP029_CEL (ZIP file, 74 MB) Pareo L.sativa oakleaf green BSP029
LETG_BSP030_CEL (ZIP file, 72 MB) Grenadine L.sativa oakleaf red BSP030
LETG_DIANA_CEL (ZIP file, 70 MB) 05G535-1 L.sativa butterhead Diana
LETG_GREENLAKE_CEL (ZIP file, 72 MB) 04G1268-4 L.sativa iceberg Greenlake
LETG_LSALIGNA_CEL (ZIP file, 69 MB) CGN5271 L. saligna butterhead Lsaligna
LETG_OLOF_CEL (ZIP file, 72 MB) Olof L.sativa butterhead Olof
LETG_UCD002_CEL (ZIP file, 72 MB) Valmaine L.sativa cos UCD002
LETG_UCD003_CEL (ZIP file, 68 MB) Salad Bowl L.sativa green leaf UCD003
LETG_UCD004_CEL (ZIP file, 75 MB) Calmar L.sativa iceberg UCD004
LETG_UCD005_CEL (ZIP file, 74 MB) Kordaat L.sativa butterhead UCD005
LETG_UCD006_CEL (ZIP file, 70 MB) Vanguard 75 L.sativa crisphead UCD006
LETG_UCD007_CEL (ZIP file, 69 MB) Mariska L.sativa butterhead UCD007
LETG_UCD010_CEL (ZIP file, 70 MB) LSE18 L. serriola N/A UCD010
LETG_UCD011_CEL (ZIP file, 70 MB) LS102 L. serriola N/A UCD011
LETG_UCD012_CEL (ZIP file, 71 MB) CGN14263 L. serriola N/A UCD012
LETG_UCD013_CEL (ZIP file, 72 MB) CGN14278 L. serriola N/A UCD013
LETG_UCD014_CEL (ZIP file, 71 MB) PI251246 L. sativa oil UCD014
LETG_UCD017_CEL (ZIP file, 71 MB) PI491204 L. saligna N/A UCD017
LETG_UCD018_CEL (ZIP file, 65 MB) UK-1 L. virosa N/A UCD018
LETG_UCD019_CEL (ZIP file, 62 MB) PIVT208 L. virosa N/A UCD019
LETG_UCD020_CEL (ZIP file, 65 MB) PI274378 L. perennis N/A UCD020
LETG_UCD1_CEL (ZIP file, 71 MB) UC1W/71 L. saligna N/A UCD1
LETG_ICEBERG_CEL (ZIP file, 72 MB) Iceberg L.sativa crisphead iceberg Iceberg
LETG_SALADINE_CEL (ZIP file, 74 MB) Saladine L.sativa crisphead iceberg Saladine


Processed CEL files of diversity panel
The files in this section are generated by R after background correction and quantile normalization. There are two sets of normalized data distinguished by _N_81 and _N_85 embedded in the file name. The reason is that at first we normalized 50 genotypes and ran the QC analysis. We found 4 chips that needed to be re-hybridized. On the other hand we added two new genotypes to the panel that needed to be background corrected and normalized. These additional chips necessitated the renormalization of all chips together.

Section:A - Processed CEL files (normalization code _N_81) of diversity panel of 50 lettuce genotypes can be downloaded from here

Added on 27 Feb 2009

LETG_BSP001_N_81_R_processed (ZIPfile, 245 MB) Cantabria L.sativa butterhead BSP001
LETG_BSP002_N_81_R_processed (ZIPfile, 246 MB) Marianna L.sativa butterhead BSP002
LETG_BSP003_N_81_R_processed (ZIPfile, 239 MB) Nadine L.sativa butterhead BSP003
LETG_BSP004_N_81_R_processed (ZIPfile, 244 MB) Rex L.sativa butterhead BSP004
LETG_BSP005_N_81_R_processed (ZIPfile, 257 MB) Fenston L.sativa butterhead BSP005
LETG_BSP006_N_81_R_processed (ZIPfile, 241 MB) Yael L.sativa cos BSP006
LETG_BSP007_N_81_R_processed (ZIPfile, 245 MB) Filipus L.sativa cos BSP007
LETG_BSP008_N_81_R_processed (ZIPfile, 236 MB) Odra L.sativa cos BSP008
LETG_BSP009_N_81_R_processed (ZIPfile, 246 MB) Pinokkio L.sativa cos BSP009
LETG_BSP010_N_81_R_processed (ZIPfile, 249 MB) Romaserra L.sativa cos BSP010
LETG_BSP011_N_81_R_processed (ZIPfile, 247 MB) Angie L.sativa crisphead batavia green BSP011
LETG_BSP012_N_81_R_processed (ZIPfile, 254 MB) Reglice L.sativa crisphead batavia green BSP012
LETG_BSP013_N_81_R_processed (ZIPfile, 248 MB) Funly L.sativa crisphead batavia green BSP013
LETG_BSP014_N_81_R_processed (ZIPfile, 244 MB) Noisette L.sativa crisphead batavia green BSP014
LETG_BSP015_N_81_R_processed (ZIPfile, 250 MB) Iceberg L.sativa crisphead batavia red BSP015
LETG_BSP016_N_81_R_processed (ZIPfile, 246 MB) Luana L.sativa crisphead batavia red BSP016
LETG_BSP017_N_81_R_processed (ZIPfile, 244 MB) Astral L.sativa crisphead iceberg BSP017
LETG_BSP018_N_81_R_processed (ZIPfile, 236 MB) Tiger L.sativa crisphead iceberg BSP018
LETG_BSP019_N_81_R_processed (ZIPfile, 241 MB) Robinson L.sativa crisphead iceberg BSP019
LETG_BSP020_N_81_R_processed (ZIPfile, 246 MB) Lilach L.sativa crisphead iceberg BSP020
LETG_BSP021_N_81_R_processed (ZIPfile, 249 MB) Berwick L.sativa curly BSP021
LETG_BSP022_N_81_R_processed (ZIPfile, 259 MB) Cancan L.sativa frisee BSP022
LETG_BSP023_N_81_R_processed (ZIPfile, 238 MB) Xanadu L.sativa grasse BSP023
LETG_BSP024_N_81_R_processed (ZIPfile, 248 MB) Aído L.sativa grasse red BSP024
LETG_BSP025_N_81_R_processed (ZIPfile, 247 MB) Xena L.sativa green leaf BSP025
LETG_BSP026_N_81_R_processed (ZIPfile, 259 MB) Deep Red L.sativa red leaf BSP026
LETG_BSP027_N_81_R_processed (ZIPfile, 250 MB) Locarno L.sativa lollo bionda BSP027
LETG_BSP028_N_81_R_processed (ZIPfile, 254 MB) Concorde L.sativa lollo rossa BSP028
LETG_BSP029_N_81_R_processed (ZIPfile, 257 MB) Pareo L.sativa oakleaf green BSP029
LETG_BSP030_N_81_R_processed (ZIPfile, 248 MB) Grenadine L.sativa oakleaf red BSP030
LETG_DIANA_N_81_R_processed (ZIPfile, 253 MB) 05G535-1 L.sativa butterhead Diana
LETG_GREENLA_N_81_R_processed (ZIPfile, 245 MB) 04G1268-4 L.sativa iceberg Greenlake
LETG_LSALIGN_N_81_R_processed (ZIPfile, 253 MB) CGN5271 L. saligna butterhead Lsaligna
LETG_OLOF_N_81_R_processed (ZIPfile, 254 MB) Olof L.sativa butterhead Olof
LETG_UCD002_N_81_R_processed (ZIPfile, 242 MB) Valmaine L.sativa cos UCD002
LETG_UCD003_N_81_R_processed (ZIPfile, 262 MB) Salad Bowl L.sativa green leaf UCD003
LETG_UCD004_81_R_processed (ZIPfile, 258 MB) Calmar L.sativa iceberg UCD004
LETG_UCD005_81_R_processed (ZIPfile, 247 MB) Kordaat L.sativa butterhead UCD005
LETG_UCD006_81_R_processed (ZIPfile, 244 MB) Vanguard 75 L.sativa crisphead UCD006
LETG_UCD007_81_R_processed (ZIPfile, 248 MB) Mariska L.sativa butterhead UCD007
LETG_UCD010_81_R_processed (ZIPfile, 249 MB) LSE18 L. serriola N/A UCD010
LETG_UCD011_81_R_processed (ZIPfile, 250 MB) LS102 L. serriola N/A UCD011
LETG_UCD012_81_R_processed (ZIPfile, 253 MB) CGN14263 L. serriola N/A UCD012
LETG_UCD013_81_R_processed (ZIPfile, 249 MB) CGN14278 L. serriola N/A UCD013
LETG_UCD014_81_R_processed (ZIPfile, 250 MB) PI251246 L. sativa oil UCD014
LETG_UCD017_81_R_processed (ZIPfile, 239 MB) PI491204 L. saligna N/A UCD017
LETG_UCD018_81_R_processed (ZIPfile, 241 MB) UK-1 L. virosa N/A UCD018
LETG_UCD019_81_R_processed (ZIPfile, 234 MB) PIVT208 L. virosa N/A UCD019
LETG_UCD020_81_R_processed (ZIPfile, 250 MB) PI274378 L. perennis N/A UCD020
LETG_UCD1_81_R_processed (ZIPfile, 251 MB) UC1W/71 L. saligna N/A UCD1


Section:B - Processed CEL files (normalization code _N_85) of diversity panel 52 lettuce genotypes can be downloaded from here

Added on 04 March 2009

LETG_BSP001_N_85_R_processed (ZIPfile, 248 MB) Cantabria L.sativa butterhead BSP001
LETG_BSP002_N_85_R_processed (ZIPfile, 249 MB) Marianna L.sativa butterhead BSP002
LETG_BSP003_N_85_R_processed (ZIPfile, 242 MB) Nadine L.sativa butterhead BSP003
LETG_BSP005_N_85_R_processed (ZIPfile, 260 MB) Fenston L.sativa butterhead BSP005
LETG_BSP006_N_85_R_processed (ZIPfile, 244 MB) Yael L.sativa cos BSP006
LETG_BSP007_N_85_R_processed (ZIPfile, 248 MB) Filipus L.sativa cos BSP007
LETG_BSP008_N_85_R_processed (ZIPfile, 238 MB) Odra L.sativa cos BSP008
LETG_BSP009_N_85_R_processed (ZIPfile, 248 MB) Pinokkio L.sativa cos BSP009
LETG_BSP010_N_85_R_processed (ZIPfile, 252 MB) Romaserra L.sativa cos BSP010
LETG_BSP011_N_85_R_processed (ZIPfile, 249 MB) Angie L.sativa crisphead batavia green BSP011
LETG_BSP012_N_85_R_processed (ZIPfile, 257 MB) Reglice L.sativa crisphead batavia green BSP012
LETG_BSP013_N_85_R_processed (ZIPfile, 250 MB) Funly L.sativa crisphead batavia green BSP013
LETG_BSP014_N_85_R_processed (ZIPfile, 246 MB) Noisette L.sativa crisphead batavia green BSP014
LETG_BSP015_N_85_R_processed (ZIPfile, 253 MB) Iceberg L.sativa crisphead batavia red BSP015
LETG_BSP016_N_85_R_processed (ZIPfile, 249 MB) Luana L.sativa crisphead batavia red BSP016
LETG_BSP017_N_85_R_processed (ZIPfile, 335 MB) Astral L.sativa crisphead iceberg BSP017
LETG_BSP018_N_85_R_processed (ZIPfile, 238 MB) Tiger L.sativa crisphead iceberg BSP018
LETG_BSP019_N_85_R_processed (ZIPfile, 244 MB) Robinson L.sativa crisphead iceberg BSP019
LETG_BSP020_N_85_R_processed (ZIPfile, 249 MB) Lilach L.sativa crisphead iceberg BSP020
LETG_BSP021_N_85_R_processed (ZIPfile, 252 MB) Berwick L.sativa curly BSP021
LETG_BSP022_N_85_R_processed (ZIPfile, 262 MB) Cancan L.sativa frisee BSP022
LETG_BSP023_N_85_R_processed (ZIPfile, 241 MB) Xanadu L.sativa grasse BSP023
LETG_BSP024_N_85_R_processed (ZIPfile, 251 MB) Aído L.sativa grasse red BSP024
LETG_BSP025_N_85_R_processed (ZIPfile, 250 MB) Xena L.sativa green leaf BSP025
LETG_BSP026_N_85_R_processed (ZIPfile, 262 MB) Deep Red L.sativa red leaf BSP026
LETG_BSP027_N_85_R_processed (ZIPfile, 253 MB) Locarno L.sativa lollo bionda BSP027
LETG_BSP028_N_85_R_processed (ZIPfile, 257 MB) Concorde L.sativa lollo rossa BSP028
LETG_BSP029_N_85_R_processed (ZIPfile, 261 MB) Pareo L.sativa oakleaf green BSP029
LETG_BSP030_N_85_R_processed (ZIPfile, 256 MB) Grenadine L.sativa oakleaf red BSP030
LETG_DIANA_N_85_R_processed (ZIPfile, 251 MB) 05G535-1 L.sativa butterhead Diana
LETG_GREENLA_N_85_R_processed (ZIPfile, 255 MB) 04G1268-4 L.sativa iceberg Greenlake
LETG_LSALIGN_N_85_R_processed (ZIPfile, 248 MB) CGN5271 L. saligna butterhead Lsaligna
LETG_OLOF_N_85_R_processed (ZIPfile, 256 MB) Olof L.sativa butterhead Olof
LETG_UCD002_N_85_R_processed (ZIPfile, 346 MB) Valmaine L.sativa cos UCD002
LETG_UCD003_N_85_R_processed (ZIPfile, 244 MB) Salad Bowl L.sativa green leaf UCD003
LETG_UCD004_85_R_processed (ZIPfile, 266 MB) Calmar L.sativa iceberg UCD004
LETG_UCD005_85_R_processed (ZIPfile, 261 MB) Kordaat L.sativa butterhead UCD005
LETG_UCD006_85_R_processed (ZIPfile, 250 MB) Vanguard 75 L.sativa crisphead UCD006
LETG_UCD007_85_R_processed (ZIPfile, 247 MB) Mariska L.sativa butterhead UCD007
LETG_UCD010_85_R_processed (ZIPfile, 251 MB) LSE18 L. serriola N/A UCD010
LETG_UCD011_85_R_processed (ZIPfile, 252 MB) LS102 L. serriola N/A UCD011
LETG_UCD012_85_R_processed (ZIPfile, 253 MB) CGN14263 L. serriola N/A UCD012
LETG_UCD013_85_R_processed (ZIPfile, 256 MB) CGN14278 L. serriola N/A UCD013
LETG_UCD014_85_R_processed (ZIPfile, 252 MB) PI251246 L. sativa oil UCD014
LETG_UCD017_85_R_processed (ZIPfile, 253 MB) PI491204 L. saligna N/A UCD017
LETG_UCD018_85_R_processed (ZIPfile, 242 MB) UK-1 L. virosa N/A UCD018
LETG_UCD019_85_R_processed (ZIPfile, 244 MB) PIVT208 L. virosa N/A UCD019
LETG_UCD020_85_R_processed (ZIPfile, 237 MB) PI274378 L. perennis N/A UCD020
LETG_UCD1_85_R_processed (ZIPfile, 254 MB) UC1W/71 L. saligna N/A UCD1
LETG_ICEBERG_N_85_R_processed (ZIPfile, 257 MB) Iceberg L.sativa crisphead iceberg Iceberg
LETG_SALADIN_N_85_R_processed (ZIPfile, 263 MB) Saladine L.sativa crisphead iceberg Saladine



Contact information
Send Email to Hamid Ashrafi
Authors: Hans van Leeuwen, Hamid Ashrafi, Sebastian Reyes Chin-Wo


Last modified: February 06, 2016. 14:45:12 pm PST